Publication

Twenty-One Genome Sequences from Pseudomonas Species and 19 Genome Sequences from Diverse Bacteria Isolated from the Rhizosphere and Endosphere of Populus deltoides Public

Steven D. Brown, Sagar M. Utturkar, Dawn M. Klingeman, Courtney M. Johnson, Stanton L. Martin, Miriam L. Land, Tse-Yuan S. Lu, Christopher W. Schadt, Mitchel J. Doktycz and Dale A. Pelletier 2012 December 18 J. Bacteriol. November 2012 vol. 194 no. 21 5991-5993
Download Publication: J. Bacteriol.-2012-Brown-5991-3.pdf

Abstract

To aid in the investigation of the Populus deltoides microbiome, we generated draft genome sequences for 21 Pseudomonas strains and 19 other diverse bacteria isolated from Populus deltoides roots. Genome sequences for isolates similar to Acidovorax, Bradyrhizobium, Brevibacillus, Caulobacter, Chryseobacterium, Flavobacterium, Herbaspirillum, Novosphingobium, Pantoea, Phyllobacterium, Polaromonas, Rhizobium, Sphingobium, and Variovorax were generated.

Highlights

Organism and accessions numbers of genome sequences for 40 rhizosphere and endosphere bacteria
Organism                                                     Accession no.

Acidovorax sp. strain
CF316    E                 AKJX00000000

Bradyrhizobium sp. strain YR681 
E            AKIY00000000

Brevibacillus sp. strain CF112 
  E               AKKB00000000

Brevibacillus sp. strain BC25 
  E                  AKIX00000000

Caulobacter sp. strain AP07 
R                   AKKF00000000

Chryseobacterium sp. strain CF314 
E        AKJY00000000

Flavobacterium sp. strain CF136   E           
AKJZ00000000
 
Herbaspirillum sp. strain CF444   E            AKJW00000000
Herbaspirillum sp. strain YR522 
E              AKJA00000000

Novosphingobium sp. strain AP12 
R         AKKE00000000

Pantoea sp. strain GM01
   R                      AKIU00000000

Pantoea sp. strain YR343   R                     
AKIT00000000

Phyllobacterium sp. strain YR531
  E         AKIZ00000000

Polaromonas sp. strain CF318   E             
AKIV00000000
Pseudomonas sp. strain GM16  E              AKJV00000000
Pseudomonas sp. strain GM84  R             
AKJC00000000

Pseudomonas sp. strain GM24  E             
AKJR00000000

Pseudomonas sp. strain GM102 E            
AKJB00000000

Pseudomonas sp. strain GM33   E          
  AKJO00000000

Pseudomonas sp. strain GM78  E             
AKJF00000000

Pseudomonas sp. strain GM80  E             
AKJD00000000
Pseudomonas sp. strain GM17  E              AKJU00000000
Pseudomonas sp. strain GM79  E            
AKJE00000000

Pseudomonas sp. strain GM67  E            
AKJH00000000

Pseudomonas sp. strain GM74  R            
AKJG00000000

Pseudomonas sp. strain GM30  E            
AKJP00000000

Pseudomonas sp. strain GM41  E            
AKJN00000000

Pseudomonas sp. strain GM50  E            
AKJK00000000

Pseudomonas sp. strain GM25 
R             AKJQ00000000

Pseudomonas sp. strain GM49  R            
AKJL00000000

Pseudomonas sp. strain GM60  E            
AKJI00000000

Pseudomonas sp. strain GM21  E            
AKJS00000000

Pseudomonas sp. strain GM55  E            
AKJJ00000000 

seudomonas sp. strain GM18    E            
AKJT00000000
Pseudomonas sp. strain GM48  R             AKJM00000000
Rhizobium sp. strain CF142    E               
AJWE00000000 

Rhizobium sp. strain CF122    E               
AKKA00000000
Rhizobium sp. strain AP16      E                AJVM00000000
Sphingobium sp. strain AP49  E               
AJVL00000000

Variovorax sp. strain CF313     E              
AKIW00000000

  •  E, endosphere; R, rhizosphere.



Citation

Twenty-one genome sequences from Pseudomonas species and 19 genome sequences from diverse bacteria isolated from the rhizosphere and endosphere of Populus deltoides. Brown SD, Utturkar SM, Klingeman DM, Johnson CM, Martin SL, Land ML, Lu TY, Schadt CW, Doktycz MJ, Pelletier DA. J Bacteriol. 2012 Nov;194(21):5991-3. doi: 10.1128/JB.01243-12.