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Genus Species Strain Year IMG Genome ID Tree Species Tree Genome Size Contigs Proteins (Prodigal) Domains (PfamA) Quality Score (QS) 16S rRNA (RNAmmer) tRNA (tRNAscan-SE)

* No data (draft genome)


Prodigal: prokaryotic gene recognition and translation initiation site identification.
Hyatt D, Chen GL, Locascio PF, Land ML, Larimer FW, Hauser LJ.
BMC Bioinformatics, 11:119 (2010).

Pfam: the protein families database.
Finn RD, Bateman A, Clements J, Coggill P, Eberhardt RY, Eddy SR, Heger A, Hetherington K, Holm L, Mistry J, Sonnhammer EL, Tate J, Punta M.
Nucleic Acids Research, 42:D222-320, (Database issue; 2014).

Quality scores for 32,000 genomes.
Land ML, Hyatt D, Jun SR, Kora GH, Hauser LJ, Lukjancenko O, Ussery DW.
Stand Genomic Science, 9:20 (2014).

RNAmmer: consistent and rapid annotation of ribosomal RNA genes.
Lagesen K, Hallin P, Rødland EA, Staerfeldt HH, Rognes T, Ussery DW.
Nucleic Acids Research, 35:3100-3108, (2007).

tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.
Lowe TM, Eddy SR.
Nucleic Acids Research, 25:955-964, (1997).